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microRNA Detection Microarray Service - Probe Content

microRNA Microarray Service - Available Arrays

 

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Our microRNA arrays cover all species for which sequence data are available in the miRBase Sequence Database and the Plant MicroRNA Database.  Although these sequence databases are being continually updated as new sequences are experimentally verified, the contents of our standard arrays are updated in synchronization with the databases.  This synchronization is made possible by our flexible µParaflo® microfluidic chip technology .  We continuously offer the flexibility of sequence selection.  Customers who want to combine miRNAs of different species and/or add custom sequences to standard arrays may do so by requesting custom arrays.  When the number of added sequences is below 100, the addition will be free of additional charge.

Available Arrays - miRBase

Special Notice - miRBase was updated to version 15 on April 26th, 2010.  This probe content is immediately available on all our standard and custom microarrays.  Detail array content information will be updated here shortly.

We can synthesize microRNA arrays for all species that are listed in the miRBase Sequence Database.  We have listed a subset of our most popular species below. The current probe content comes from version 15 of the miRBase sequence database which was updated on April 26th, 2010.  (See the 15 release summary) (See a comparison to previous versions) Please call if you don't see your species of interest.

Available Arrays - Plant MicroRNA Database (PMRD)

We can synthesize microRNA arrays for all species that are listed in the Plant MicroRNA Database.  We have listed a subset of our most popular species below. The current probe content comes from version 1 of the PMRD sequence database Oct, 2009.  Please call if you don't see your species of interest.

Both miRBase 15 and PMRD 1 probe content is immediately available on all of our standard or custom microRNA microarrays.

Addition of your custom sequences to any of these standard arrays is available for no charge. (up to 100 custom sequences)

See a comparison to other microRNA Array providers

This table lists the commonly ordered arrays.  Look below for a complete list of all the available species arrays.

Description Genus species Part Number miRBase Version Unique Mature miRNA Probes

 

miRBase Array Content - Popular Catalog Arrays - Single Species

Human Homo sapiens MRA-1001 15 1090
Mouse Mus musculus MRA-1002 15 707
Rat Rattus norvegicus MRA-1003 15 387
Zebrafish Danio rerio MRA-1004 15 248
Chicken Gallus gallus MRA-1005 15 542
Fruit Fly Drosophila melanogaster MRA-1006 15 186
Soil Nematode Caenorhabditis elegans MRA-1007 15 232
Rice Oryza sativa MRA-1008 15 309
Maize Zea Augusts MRA-1009 15 202
Arabidopsis Arabidopsis thaliana MRA-1010 15 172
Cow Bos Taurus MRA-1011 15 676
Pig Sus scrofa MRA-1013 15 188
Horse Equus caballus MRA-1014 15 358

 

miRBase Array Content - Popular Catalog Arrays - Multiple Species (Please contact us before ordering)

Human/Mouse/Rat Human/Mouse/Rat MRA-1030 15 1630
Human/Virus Human/Virus MRA-1041 15 1447
Mammals Mammalia MRA-1031 15 3130
Rodents Rodentia MRA-1032 15 820
Vertebrates Vertebrata MRA-1033 15 3876
Primates Primates MRA-1034 15 1465
Insects Arthropoda MRA-1035 15 1247
Nematodes Nematoda MRA-1036 15 553
Fishes Pisces MRA-1037 15 267
Plants Viridiplantae MRA-1038 15 1450
Viruses Viruses MRA-1039 15 257
Frogs Amphibia MRA-1040 15 173

 

Plant MicroRNA Database Array Content - Popular Catalog  Arrays

Rice Oryza sativa MRA-1008B 1.0 1940
Maize Zea Augusts MRA-1009A 1.0 81
Arabidopsis Arabidopsis thaliana MRA-1010A 1.0 1023
Wheat Triticum aestivum MRA-1015A 1.0 78
All Plants Viridiplantae MRA-1038B 1.0 5690

 

Custom Arrays

Customer Specified Probes *up to 100 additional sequences      
Customer Specified Probes up to 3,748 sequences MRA-2001    

 

All Available miRBase Species Arrays

Description (Common) Genus species miRBase Version Unique Mature miRNA Probes
 

Cephalochordata

     
Branchiostoma floridae Branchiostoma floridae 15  

Urochordata

     
Ciona intestinalis Ciona intestinalis 15  
Ciona savignyi Ciona savignyi 15  
Oikopleura dioica Oikopleura dioica 15  

Amphibia

     
Frog Xenopus laevis 15  
Pipid Frog Xenopus tropicalis 15  

Aves

     
Chicken Gallus gallus 15  

Mammalia

     
Dog Canis familiaris 15  
Gray Short-tailed opossum Monodelphis domestica 15  
Spider monkey Ateles geoffroyi 15  
Woolly monkey Lagothrix lagotricha 15  
White-lipped tamarin Saguinus labiatus 15  
Rhesus monkey Macaca mulatta 15  
Pig-tailed macaque Macaca nemestrina 15  
Black snub-nosed monkey Pygathrix bieti 15  
Gorilla Gorilla gorilla 15  
Human Homo sapiens 15  
Pygmy chimpanzee Pan paniscus 15  
Common chimpanzee Pan troglodytes 15  
Orangutan Pongo pygmaeus 15  
Siamang Symphalangus syndactylu 15  
Ring-tailed lemur Lemur catta 15  
Platypus Ornithorhynchus anatinus 15  
Chinese hamster Cricetulus griseus 15  
Mouse Mus musculus 15  
Rat Rattus norvegicus 15  
Cow Bos taurus 15  
Sheep Ovis aries 15  
Pig Sus scrofa 15  

Pisces

     
Zebrafish Danio rerio 15  
Fugu pufferfish Fugu rubripes 15  
Tetraodon pufferfish Tetraodon nigroviridis 15  

Echinodermata

     
Strongylocentrotus purpuratus Purple Sea Urchin 15  

Hemichordata

     
Saccoglossus kowalevskii Saccoglossus kowalevskii 15  

Arthropoda

     
Deer Tick Ixodes scapularis 15  
Mosquito Anopheles gambiae 15  
Honeybee Apis mellifera 15  
Silkworm Bombyx mori 15  
Drosophila ananassae Drosophila ananassae 15  
Drosophila ananassae Drosophila ananassae 15  
Drosophila grimshawi Drosophila grimshawi 15  
Drosophila melanogaster Drosophila melanogaster 15  
Drosophila mojavensis Drosophila mojavensis 15  
Drosophila persimilis Drosophila persimilis 15  
Drosophila pseudoobscura Drosophila pseudoobscura 15  
Drosophila sechellia Drosophila sechellia 15  
Drosophila simulans Drosophila simulans 15  
Drosophila virilis Drosophila virilis 15  
Drosophila willistoni Drosophila willistoni 15  
Drosophila yakuba Drosophila yakuba 15  
Locusta migratoria Migratory Locust 15  
Tribolium castaneum Tribolium castaneum 15  

Nematoda

     
C. briggsae Caenorhabditis briggsae 15  
C. elegans Caenorhabditis elegans 15  

Platyhelminthes

     
Schistosoma japonicum Schistosoma japonicum 15  
Schistosoma mansoni Schistosoma mansoni 15  
Planarian Schmidtea mediterranea 15  

Annelida

     
Capitella sp I Capitella sp I 15  

Mollusca

     
Haliotis rufescens Haliotis rufrescens 15  
Lottia gigantea Lottia gigantea 15  

Nemertea

     
Cerebratulus lacteus Cerebratulus lacteus 15  

Cnidaria

     
Hydra magnipapillata Hydra magnipapillata 15  
Nematostella vectensis Nematostella vectensis 15  

Porifera

     
Amphimedon queenslandica Amphimedon queenslandica 15  

Mycetozoa

     
Dictyostelium discoideum Dictyostelium discoideum 15  

Protistae

     
Algae Chlamydomonas reinhardtii 15  

Viridiplantae

     
Loblolly pine Pinus taeda 15  
Physcomitrella patens Physcomitrella patens 15  
Selaginella moellendorffi Selaginella moellendorffii 15  
Arabidopsis Arabidopsis thaliana 15  
Brassica napus Brassica napus 15  
Wild cabbage Brassica oleracea 15  
Brassica rapa Brassica rapa 15  
Carica papaya Carica papaya 15  
Soybean Glycine max 15  
Lotus japonicus Lotus japonicus 15  
M. truncatula Medicago truncatula 15  
Vigna unguiculata Vigna unguiculata 15  
Levant cotton Gossypium herbecium 15  
Mexican cotton Gossypium hirsutum 15  
G. raimondii Gossypium rammindii 15  
Cottonwood Populus trichocarpa 15  
Tomato Solanum lycopersicum 15  
Grape Vitis vinifera 15  
Rice Oryza sativa 15  
Sugarcane Saccharum officinarum 15  
Sorghum Sorghum bicolor 15  
Wheat Triticum aestivum 15  
Corn Zea mays 15  

Viruses

     
BK polyomavirus BK polyomavirus 15  
Epstein Barr virus Epstein Barr virus 15  
Herpes Simplex Virus 1 Herpes Simplex Virus 1 15  
Herpes Simplex Virus 2 Herpes Simplex Virus 2 15  
Human cytomegalovirus Human cytomegalovirus 15  
Human immunodeficiency virus 1 Human immunodeficiency virus 1 15  
JC polyomavirus JC polyomavirus 15  
Kaposi sarcoma-associated herpesvirus Kaposi sarcoma-associated herpesvirus 15  
Mareks disease virus Mareks disease virus 15  
Mareks disease virus type 2 Mareks disease virus type 2 15  
Merkel cell polyomavirus Merkel cell polyomavirus 15  
Mouse cytomegalovirus Mouse cytomegalovirus 15  
Mouse gammaherpesvirus 68 Mouse gammaherpesvirus 68 15  
Rhesus lymphocryptovirus Rhesus lymphocryptovirus 15  
Rhesus monkey rhadinovirus Rhesus monkey rhadinovirus 15  
Simian virus 40 Simian virus 40 15  

 

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